Projects
Ongoing and past research projects.
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High-throughput biofilm phenotyping
Automated imaging and feature extraction for large bacterial mutant libraries. -
Evolutionary modeling of the impact of spatial structure on antibiotic resistance
Stochastic and deterministic models of adaptation under stress. -
Characterizing the role of an unknown transcription factor in
Pseudomonas aeruginosa (Undergraduate thesis research)
Molecular genetics, microbiology, and bioinformatics to uncover the role of a probable transcription factor.
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Predicting the evolutionary stability of synonymous mutations (Computational Genomics class project)
Combining experimental DMS results in yeast to predict fitness effects of synonymous and nonsynonymous mutations.
Poster (PDF) · Report (PDF) -
Probing chirality and its latent space organization in E(3)-equivariant Boltzmann generators for alanine dipeptide (Computational Structural Biology class project)
Investigating chirality-related artifacts in E(3)-equivariant BG-generated samples.
Poster (PDF)